PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0033s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 405aa    MW: 44956.9 Da    PI: 7.826
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0033s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40172248177
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                             +CqvegC++ l +ak+yhrrhkvCe+hska++v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk++
  SapurV1A.0033s0320.1.p 172 RCQVEGCHVALINAKDYHRRHKVCEMHSKAAKVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSS 248
                             6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-34166234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-38171251IPR004333Transcription factor, SBP-box
PfamPF031103.7E-31173246IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEGKMENDGN KGQENDRANL SWDIWGLNTS RFDFDSSDST AAAATNTFFT TTTSLAENGS  60
PTHPEAKSAH GFFIPYRNCW PCHNINNISY QQLSLFAGDG SNLHPDPHQM CLKLGKRHYF  120
EDSTSNNNTN PIIDRDVVGG FSIGKRGKPY YTVGGGGAHD EPSSSSSVNV PRCQVEGCHV  180
ALINAKDYHR RHKVCEMHSK AAKVIVLGLE QRFCQQCSRF HVVSEFDDAK RSCRRRLAGH  240
NERRRKSSLD SVPRNSSQDR LIAGRFPYIA SPTGYAFSLL SSKADSWVSP SDLPSRSSAA  300
LRELIAENRA AILARQLILE KHLHHHAVED LGESQPSSNF HQQQMLSEPH NWGRFNTTTG  360
THVTLELMRA PSSAFGFLPA REKNKEEGGE CSQFWSTLEG AHLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31164246284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0033s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302512.10.0squamosa promoter-binding-like protein 7
SwissprotQ7XT425e-57SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLB9GPA80.0B9GPA8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96132738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.43e-38squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]