PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0034s0330.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 223aa    MW: 25145.4 Da    PI: 9.0109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0034s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141259148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W ++Ed+ l+ +v+ +G g+W+t++++ g+ R +k+c++rw +yl
  SapurV1A.0034s0330.1.p 12 KGLWKPDEDLVLKTYVETHGEGNWSTVSKKSGLMRGGKSCRLRWKNYL 59
                            678*******************************************97 PP
2Myb_DNA-binding51.42.6e-1665110148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg +++eE++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0034s0330.1.p  65 RGGMSQEEEDMIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                             6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21662IPR009057Homeodomain-like
PROSITE profilePS5129416.887759IPR017930Myb domain
SuperFamilySSF466894.97E-289106IPR009057Homeodomain-like
SMARTSM007174.6E-111161IPR001005SANT/Myb domain
PfamPF002491.4E-121259IPR001005SANT/Myb domain
CDDcd001675.22E-91559No hitNo description
PROSITE profilePS5129424.74760114IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2463114IPR009057Homeodomain-like
SMARTSM007175.0E-1664112IPR001005SANT/Myb domain
PfamPF002491.6E-1465110IPR001005SANT/Myb domain
CDDcd001677.32E-1268110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MESIEAKPKV KKGLWKPDED LVLKTYVETH GEGNWSTVSK KSGLMRGGKS CRLRWKNYLR  60
PNIKRGGMSQ EEEDMIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKRLPSGKRM  120
SADSTPDQNK SKRLRALGDS QPAGNTIPAG ITEELEGKSQ EKGERSAVSD AWTQQAAQSM  180
NYYIESPMVP DNNATFVFDD EPFLAYWDSF VLFESIGCGG DW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-24811423128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0034s0330.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325206.11e-148transcription factor MYB82
SwissprotQ9LTF72e-66MYB82_ARATH; Transcription factor MYB82
TrEMBLB9IMW01e-147B9IMW0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12780.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.19e-69myb domain protein 82