PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0034s0500.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 137aa MW: 15582.5 Da PI: 10.2595

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0034s0500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	131.4	1.2e-40	18	109	79	170
YABBY 79 eenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++ + + + s+s+ +++ ++ + ++ v++ v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ SapurV1A.0034s0500.2.p 18 NHISHDYRIDMGSSSKFNNKISMRTPATNIVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPH 104 333333444555555556666677788888888888************************************************* PP YABBY 166 ihfgl 170 i fgl SapurV1A.0034s0500.2.p 105 IQFGL 109 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.2E-40	15	109	IPR006780	YABBY protein
SuperFamily	SSF47095	4.71E-8	53	103	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.3E-5	57	103	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MAAAFQSLSW QDHVQASNHI SHDYRIDMGS SSKFNNKISM RTPATNIVTQ ERVVNRPPEK 60 RQRVPSAYNQ FIKEEIQRIK ANNPEISHRE AFSTAAKNWA HFPHIQFGLM LETNNQTKLD 120 DGSDKHLLSR AALLNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0034s0500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002324648.2	2e-95	axial regulator YABBY 5
Swissprot	Q8GW46	4e-50	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9IMX9	4e-94	B9IMX9_POPTR; Uncharacterized protein
STRING	POPTR_0018s12990.1	6e-95	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-52	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0034s0500.2.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]