PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0034s0770.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 213aa    MW: 24330.2 Da    PI: 8.2092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0034s0770.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1887141256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tkeq   Lee F+++ +++ +++  LA++l+L++rqV vWFqNrRa+ k
  SapurV1A.0034s0770.1.p  87 RKKLRLTKEQSSLLEESFKRHTTLNPAQKHSLAERLNLKTRQVEVWFQNRRARTK 141
                             678899***********************************************98 PP
2HD-ZIP_I/II119.71.5e-3887176190
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq++lLEesF+++++L+p +K++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL
  SapurV1A.0034s0770.1.p  87 RKKLRLTKEQSSLLEESFKRHTTLNPAQKHSLAERLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSNENRRLKKELQEL 173
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 ree 90 
                             r++
  SapurV1A.0034s0770.1.p 174 RSQ 176
                             976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-1772142IPR009057Homeodomain-like
SuperFamilySSF466892.42E-1874144IPR009057Homeodomain-like
PROSITE profilePS5007116.92583143IPR001356Homeobox domain
SMARTSM003892.8E-1585147IPR001356Homeobox domain
PfamPF000467.2E-1687141IPR001356Homeobox domain
CDDcd000867.29E-1587144No hitNo description
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
SMARTSM003406.9E-18143186IPR003106Leucine zipper, homeobox-associated
PfamPF021834.9E-10143177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MEEGYCDTRL GLGLGGASYE PWPQKREEKP AVRLDLSFTP CQNDGAMDID HRDKAEGVYF  60
KSEEDEECGN QRSDEYSVDS SVDGSGRKKL RLTKEQSSLL EESFKRHTTL NPAQKHSLAE  120
RLNLKTRQVE VWFQNRRART KLKQTEVDCE FLKKCCESLS NENRRLKKEL QELRSQKNGR  180
SQHAKDSTIT ACSSCLERIT TSQRNVAVVH KS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0034s0770.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017736.11e-108PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotA2YW038e-50HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2K1X0A81e-105A0A2K1X0A8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13300.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.11e-49HD-ZIP family protein