PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0035s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 271aa    MW: 30039.1 Da    PI: 9.6719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0035s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.4e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WTt Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  SapurV1A.0035s0030.1.p 14 RGAWTTKEDTLLINYIQAHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding53.17.6e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0035s0030.1.p  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                             7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.826961IPR017930Myb domain
SuperFamilySSF466891.54E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002495.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-231568IPR009057Homeodomain-like
CDDcd001671.11E-91661No hitNo description
PROSITE profilePS5129426.61962116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.5E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2669116IPR009057Homeodomain-like
CDDcd001674.34E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRAPCCSKV GLYRGAWTTK EDTLLINYIQ AHGEGQWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLMKNS  120
TEENKSPCMG GSAGKGSGTK ASNKRKQKED SDGISSQNGE AAAKIKIYLP KATKVCPSSV  180
TKYIQSMIRS SPRNVEDGDH TMSGLKTANN GGQGWGSNNE ELDGLVCDLD SSSPNSVQNH  240
IMLDDIFEEY QQLLKADDKA PLPLLRMMRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0035s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026986.11e-150PREDICTED: myb-related protein P-like
TrEMBLB9GL111e-146B9GL11_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11100.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-65myb domain protein 111