PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0035s0790.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 358aa    MW: 39453.7 Da    PI: 5.1742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0035s0790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18133183155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             ++++GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+  l+g
  SapurV1A.0035s0790.1.p 133 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYETAEEAAMVYDNAAIHLRG 183
                             59********.**********72....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-30133190No hitNo description
Gene3DG3DSA:3.30.730.101.3E-29134190IPR001471AP2/ERF domain
PROSITE profilePS5103223.117134191IPR001471AP2/ERF domain
SMARTSM003801.3E-35134197IPR001471AP2/ERF domain
PfamPF008472.7E-11134183IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21134190IPR016177DNA-binding domain
PRINTSPR003675.3E-10135146IPR001471AP2/ERF domain
PRINTSPR003675.3E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDHPVKFSEH RNQTRLSISF LSNPVQYSKP PKIVRISVTD TYATDSSSDE ENEVATVSFH  60
QRNVTRVKKF VNEISIEPSP PPQPSSPRSA DGVLSDTVLR NRPSKITRKK AGDVGSRTRR  120
LPVKATANAA SGKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYETAEEA AMVYDNAAIH  180
LRGPDALTNF ITPPARCSPV TATSGYISGD ESNSNYNINN DRVVNVSSPI SVLRFGEEAE  240
TQSVSSSREV RGAGNEAREV KEGCCISENL SDFSEYNSSI DSLFPPTADI CELRSSMRDI  300
FEETSFADGG FLKDDDFSDM DLDFGFADGG FGLSSWNVKD HFQDIGDLFG SDSLLAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21130190162ATERF1
3gcc_A9e-21130190162ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0035s0790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026933.10.0PREDICTED: ethylene-responsive transcription factor CRF1
TrEMBLB9GL910.0B9GL91_POPTR; Uncharacterized protein
STRINGPOPTR_0001s10300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-57cytokinin response factor 2