PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0036s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23661.8 Da    PI: 5.5233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0036s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF436e-1416541250
                            HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            ++  R++++ KKA+EL +LCd+ v+++ + ++g+  +++
  SapurV1A.0036s0210.1.p 16 SYEERKQTLKKKASELATLCDVPVCLVCVNPDGTTETWP 54
                            8999**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.5E-141275IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.7691357IPR002100Transcription factor, MADS-box
PfamPF003196.9E-121653IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTTLRGNGAK PMKNKSYEER KQTLKKKASE LATLCDVPVC LVCVNPDGTT ETWPEEEARV  60
VDVLMAYKAQ PTIKNESKED EKGKEKVVDK APEVFETWDT RLEYLPEESL VDVLKILDRQ  120
LQAVNRAVGK EQQTGKKRKS LQDEGRSKIV HGVNDDGSQK AGLIRIFFID SAGLNLTNSC  180
TGNYSDINSF PGRNSEGNSD FEKPVVLELR LG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0036s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316498.11e-123uncharacterized protein LOC7477165
TrEMBLB9HVX11e-121B9HVX1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s24540.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40120.12e-11AGAMOUS-like 76