PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0037s0520.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 101aa    MW: 11433.9 Da    PI: 8.6954
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0037s0520.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.2e-081458344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             WT+ E +l+ +a +++ ++   +W  Ia  +g  ++++++k ++
  SapurV1A.0037s0520.1.p 14 TWTPRENKLFEKALALFDKDapdRWQNIATAVGGVKSAEEVKKHY 58
                            7********************************668********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.0561066IPR017884SANT domain
SMARTSM007171.9E-71164IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-111368IPR009057Homeodomain-like
PfamPF002491.9E-61458IPR001005SANT/Myb domain
CDDcd001673.94E-61462No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MSSSYQASRN SSSTWTPREN KLFEKALALF DKDAPDRWQN IATAVGGVKS AEEVKKHYEI  60
LLEDLRNIEC GRIPIPKYKS AGSCNNKNEE ERLLKYLNLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-29793387RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0037s0520.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464935.15e-62protein RADIALIS-like 4 isoform X2
SwissprotQ1A1739e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K1Z6H21e-60A0A2K1Z6H2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s11990.14e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-31RAD-like 6