PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0038s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 207aa    MW: 22547.2 Da    PI: 6.7698
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0038s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.23.8e-5641134194
                   NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                             vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy+eplkvyl
  SapurV1A.0038s0180.1.p  41 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYL 127
                             69************************************************************************************* PP

                   NF-YB  88 kkyrele 94 
                             ++yre +
  SapurV1A.0038s0180.1.p 128 ARYREGD 134
                             ****965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-5336146IPR009072Histone-fold
SuperFamilySSF471135.43E-3944141IPR009072Histone-fold
PfamPF008083.0E-2847111IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-217593No hitNo description
PROSITE patternPS0068507894IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-2194112No hitNo description
PRINTSPR006153.0E-21113131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRCVFFNDQC LDFFSEMADN PTSPAAGSHD SGGEQSPRSG VREQDRYLPI ANISRIMKKA  60
LPANGKIAKD AKDTVQECVS EFISFVTSEA SDKCQKEKRK TINGDDLLWA MATLGFEDYI  120
EPLKVYLARY REGDAKGSAR GGDGSSKRDA VGGLPGQNAQ FALQGSIYES TSNTFSLPPP  180
SLFHSHTNKQ TQNLKPNGIQ SQMLNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A9e-4742132393NF-YB
4awl_B8e-4742132494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A8e-4742132494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0038s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036599.11e-106PREDICTED: nuclear transcription factor Y subunit B-1 isoform X1
SwissprotQ8VYK46e-75NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2K1ZBP51e-102A0A2K1ZBP5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04440.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.32e-77nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]