PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0038s0820.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 244aa    MW: 27773.1 Da    PI: 9.657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0038s0820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-061321711155
                             HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             rR +++ +++  L++l+ +      +K + a++L++A  YIk Lq
  SapurV1A.0038s0820.1.p 132 RRSHKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 171
                             8999**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.48121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-5124175No hitNo description
SuperFamilySSF474591.96E-9132180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-8132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MDGKINVHGN SFYLGSRVFN DDHQQRDAGF SIPNQYLANY QPGYQSISST GNDISQQSTL  60
LSKRASVPEV QMDFQAMQMK TRTVNDHIEN KADLSTWKTN KRKKANSPED PWNHRAIESI  120
DIQERKFQVP VRRSHKLSDK ITALQKLVSP YGKTDTASVL QEASLYIKLL QEQIQNLFQM  180
LTGSYNSARP VRQSQEIDGR LFDLRSGGFC LVPVSFMQEM TQQQDHADPN SDPRKTIRAR  240
TSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0038s0820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0295238e-74CT029523.1 Poplar cDNA sequences.
GenBankCT0295248e-74CT029524.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311153.31e-137transcription factor bHLH110 isoform X1
TrEMBLA0A3N7FHR31e-138A0A3N7FHR3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05200.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.11e-21bHLH family protein