PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 214aa    MW: 23857.6 Da    PI: 6.7555
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-174185147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w+++
  SapurV1A.0040s0010.2.p 41 RGKMTPQEERLVLELHARWGNR-WSRIARKLP-GRTDNEIKNYWRTH 85
                            89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.762135IPR017877Myb-like domain
SuperFamilySSF466892.46E-212191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-102147IPR009057Homeodomain-like
PROSITE profilePS5129425.5323690IPR017930Myb domain
SMARTSM007176.8E-164088IPR001005SANT/Myb domain
PfamPF002499.8E-164185IPR001005SANT/Myb domain
CDDcd001671.30E-124385No hitNo description
Gene3DG3DSA:1.10.10.605.1E-204887IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGFCSESIRF EGGGRQIIGL NRTGKSCRLR WVNYLHPGLK RGKMTPQEER LVLELHARWG  60
NRWSRIARKL PGRTDNEIKN YWRTHTRKKA QERKTAMSPS LSSSNCSSSS NITTVNSPPL  120
PGTGEASFYD TGELGEAVQG GEKGYSMDDI WKDIENTINE PVCDGFSEEG CNFSCPSLAS  180
PSWEYSPDTL WSISGEESRM FLPYDDGTML LTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-18229037105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-17229091159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-17229091159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-17229060128MYB TRANSFORMING PROTEIN
1mse_C7e-18229037105C-Myb DNA-Binding Domain
1msf_C7e-18229037105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0010.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453164.11e-117transcription factor MYB48 isoform X1
SwissprotQ9LX829e-70MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A3N7FD391e-116A0A3N7FD39_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03240.11e-116(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.47e-79myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]