PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 328aa    MW: 34891.9 Da    PI: 9.5617
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.2e-3870130262
                  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                             +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nkk++
  SapurV1A.0040s0200.1.p  70 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKKTK 130
                             67899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3554126IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3273128IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.21774128IPR003851Zinc finger, Dof-type
PROSITE patternPS01361076112IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009625Biological Processresponse to insect
GO:0009753Biological Processresponse to jasmonic acid
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVFSSVPVYL DPHSWQQQQQ QPGQQLGASD ESPQLPPLPP LPHVGGSGTA GSIRPGSMSD  60
RARLAKIPQP EAALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG  120
GGCRRNKKTK SQSSSKSPVS SERQMGSTSS TSTSALPSQI IGHFPQQQTQ YPFMTSLHNL  180
TQFGVANIGL NFGGIQGQMG SASGHAVGQA DMGFQIGSSS GMGSSSFLSA GGVQQFPFFE  240
PPPTGLYPFQ SEGAETPTGI PGESNQLRSM ASSSRVSQLA PVKSEGNPGL NLSKPYLGIP  300
ENSQYYWGGN TWTDLSGLNS SSTSHFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460176.11e-177dof zinc finger protein DOF2.2 isoform X2
TrEMBLA0A3S9LK651e-177A0A3S9LK65_POPTO; Dof-type zinc finger DNA-binding family protein
STRINGPOPTR_0001s24540.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.24e-48Dof family protein