PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0420.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 485aa    MW: 53938 Da    PI: 9.7047
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0420.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07384433147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                             r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
  SapurV1A.0040s0420.3.p 384 RRPFSVTEVEALVHAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 433
                             678999********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.75E-8192282IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.901.2E-4193266No hitNo description
PROSITE profilePS500538.568195265IPR000626Ubiquitin domain
PROSITE profilePS5129415.355379438IPR017930Myb domain
SMARTSM007172.1E-6383436IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10384434IPR009057Homeodomain-like
CDDcd116601.29E-17385435No hitNo description
SuperFamilySSF466897.71E-16385466IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVQSSTVVNM CNLEDPVVLD AKPPALVSSD SRAKVPACGN HISNSSYPTN QDDLHVVSRD  60
DDENSSGCTH PITTKKFFRP APRIGDRRIR KFLASKCWKV APRLKDATVS NSDGNFKPVF  120
RKRQNCYRHQ RSERIYPFKK RKHFAYSSPS NSDGGMSCEF VSDLSLKGSN GDASVSRSRM  180
HGGQRTSFLP RDSHVKLRIK SFSVPEFLIE IPESSTVGSL KRTVMEAVTA ILGSGLHVGV  240
LLQGKKVRED NKTLRQTGIS HNNQLDALGF CLEPNPSQTP PSLSPGDSPF LLQCDTPQPI  300
CRYPPTTGEV HQDICADPEP HVNNLGNYIE SDHDSAPSPT DTSMDKSTNS KALVAVPAMN  360
VEALAVVPAH QKSKRSEIAQ RRIRRPFSVT EVEALVHAVE KLGTGRWRDV KLQAFDNAKH  420
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQAK QQFKHQQAET  480
CLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-583684711104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120141RKRQNCYRHQRSERIYPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0420.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089321e-89AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464368.10.0telomere repeat-binding protein 5 isoform X2
SwissprotQ6R0E31e-145TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2K1Z2130.0A0A2K1Z213_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-141TRF-like 2