PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0042s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 363aa    MW: 40922.6 Da    PI: 9.7017
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0042s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-3161114255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+ kgL ++hvkSHLQ+YR+
  SapurV1A.0042s0270.1.p  61 PRLRWTPDLHRCFVQAVERLGGHERATPKLVLQLMNFKGLRIAHVKSHLQMYRS 114
                             8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.77657117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-3057115IPR009057Homeodomain-like
SuperFamilySSF466898.6E-1459115IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-2261115IPR006447Myb domain, plants
PfamPF002491.5E-862113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRPVSDQISD GLRFDPSGKS SEEGDDESKT KSSGSSSNSI VEESEKASSR GVRPYARSKV  60
PRLRWTPDLH RCFVQAVERL GGHERATPKL VLQLMNFKGL RIAHVKSHLQ MYRSKRIDDQ  120
GQVINGMGDL IGSSDYFSND FWQHSLLPNI DHNHNSNFSR CGNVSWSGHG KWITRPSVPD  180
SINIIRGAGF YRSMTEKIHT GEFGSSTRHG TFHAGNNSTF SDQRRKLMQE FQDAEYHKSM  240
YHSESIQSQT RPTMKQPHVV AQLSKRRGEA NESKSLETKW SFNVEKCNQL AKRKDDDLDL  300
TLSLCTKLKG KEAKRSLSWD EEDVGSNLYL SLSSTSTKES NSVNLSMHSK YPKLTSTLDL  360
TM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0042s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103421e-137AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003744.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A2K1Z4C50.0A0A2K1Z4C5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1655549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-41G2-like family protein