PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0042s0570.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HB-other

Protein Properties

Length: 508aa MW: 57194.8 Da PI: 7.7327

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0042s0570.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	7	61	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kRt t+ q+++Le+++++++yp++e++ eLA+++gLte+q++ WF+ rR k+k+ SapurV1A.0042s0570.3.p 7 KRTVKTPAQVDALENFYNEHKYPTEEMKSELADQIGLTEKQISSWFCHRRLKDKR 61 8****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.2	2	62	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-17	4	66	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-19	4	66	IPR001356	Homeobox domain
CDD	cd00086	1.61E-18	7	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-21	7	61	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-17	7	61	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	37	60	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MEDKNFKRTV KTPAQVDALE NFYNEHKYPT EEMKSELADQ IGLTEKQISS WFCHRRLKDK 60 RLRDEGCTNG RQDRSSGIIQ DRGSGLRQDS CGSTKQGDYR NLDPREVESQ RPYGQNFHTA 120 DLTYDRTSRY TGHDSSIDNI SSGSSSSLQD KFVSQREDPY DAENSKYLAQ NEAAMPLIPK 180 GADSFGYKPS GYLKVKGEIE NAAITAVKMQ LGRHYKEDGP PLGVEFQPLP PGAFASPSRD 240 PANGPIYVGD LARMCSPDVS GVRKQSSLGT RYEVYGTKMS SHDSYTEGAN CNPEHSDSHD 300 KKSHHHLEQK PTYNGSNSNA GGNSAMDMPD DLAGETSAYV NKRHYRMSSK HGFEGRRLDS 360 LSTHHGPSGR RNSEKTEAWL YDCNNDNPKI VQRNNYMSKH PHLMRGFGKS LDTEERAPRT 420 ITEKEDKLYG EMKRMKAFHD PVRVRRHPTD ESTVAKRFRV DFPQQEYVAK ASFSERHRRT 480 NLTKGSAMER PSSFSEDEAA ETSSSAE*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MEDKNFKRTV KTPAQVDALE NFYNEHKYPT EEMKSELADQ IGLTEKQISS WFCHRRLKDK  60
RLRDEGCTNG RQDRSSGIIQ DRGSGLRQDS CGSTKQGDYR NLDPREVESQ RPYGQNFHTA  120
DLTYDRTSRY TGHDSSIDNI SSGSSSSLQD KFVSQREDPY DAENSKYLAQ NEAAMPLIPK  180
GADSFGYKPS GYLKVKGEIE NAAITAVKMQ LGRHYKEDGP PLGVEFQPLP PGAFASPSRD  240
PANGPIYVGD LARMCSPDVS GVRKQSSLGT RYEVYGTKMS SHDSYTEGAN CNPEHSDSHD  300
KKSHHHLEQK PTYNGSNSNA GGNSAMDMPD DLAGETSAYV NKRHYRMSSK HGFEGRRLDS  360
LSTHHGPSGR RNSEKTEAWL YDCNNDNPKI VQRNNYMSKH PHLMRGFGKS LDTEERAPRT  420
ITEKEDKLYG EMKRMKAFHD PVRVRRHPTD ESTVAKRFRV DFPQQEYVAK ASFSERHRRT  480
NLTKGSAMER PSSFSEDEAA ETSSSAE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0042s0570.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464501.1	0.0	uncharacterized protein LOC7475016 isoform X1
TrEMBL	A0A2K1Z474	0.0	A0A2K1Z474_POPTR; Uncharacterized protein
STRING	POPTR_0009s07600.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-85	HB-other family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0042s0570.3.p