PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0044s0420.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 348aa    MW: 38207 Da    PI: 9.4969
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0044s0420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.6e-52151421128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeelvv+yL+kk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e ewyfFs+rd+ky++g r+nra++sgyWkatg
  SapurV1A.0044s0420.1.p  15 LPPGFRFHPTDEELVVHYLEKKAASVPLPV-TIIAEIDLYKFDPWELPSKATFGEMEWYFFSPRDRKYPNGARPNRAATSGYWKATG 100
                             79****************************.89***************88888999******************************* PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk++l++ + ++vg+kk Lvfy g+ pkg kt+W+mheyrl
  SapurV1A.0044s0420.1.p 101 TDKPILASnGARKVGVKKALVFYCGKPPKGIKTNWIMHEYRL 142
                             ******9867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6410176IPR003441NAC domain
PROSITE profilePS5100561.40315176IPR003441NAC domain
PfamPF023651.4E-2716142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDSTDSSSGS QHPRLPPGFR FHPTDEELVV HYLEKKAASV PLPVTIIAEI DLYKFDPWEL  60
PSKATFGEME WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILASNG ARKVGVKKAL  120
VFYCGKPPKG IKTNWIMHEY RLINNNYSSK PPGDSATKNG GSLRLDDWVL CRIYKKNNSQ  180
RQMDQIEKEG SMEGVFATLP ASSSKNPKTP TGYASLLENE DTFFEGILTG DGMQNSSISQ  240
ILPSSGSNPN MSMTSVSANT ISEKRTLPSH RYWNDTTGLP IGLANSSAKR FHGDLISGTR  300
EDKNSLVSLL NQLPQSTPLV HAGTLLGSLG DGVLRQPFQL SSLNWSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-761518217171NO APICAL MERISTEM PROTEIN
1ut4_B5e-761518217171NO APICAL MERISTEM PROTEIN
1ut7_A5e-761518217171NO APICAL MERISTEM PROTEIN
1ut7_B5e-761518217171NO APICAL MERISTEM PROTEIN
3swm_A6e-761518220174NAC domain-containing protein 19
3swm_B6e-761518220174NAC domain-containing protein 19
3swm_C6e-761518220174NAC domain-containing protein 19
3swm_D6e-761518220174NAC domain-containing protein 19
3swp_A6e-761518220174NAC domain-containing protein 19
3swp_B6e-761518220174NAC domain-containing protein 19
3swp_C6e-761518220174NAC domain-containing protein 19
3swp_D6e-761518220174NAC domain-containing protein 19
4dul_A5e-761518217171NAC domain-containing protein 19
4dul_B5e-761518217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0044s0420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436822.10.0NAC transcription factor 25
SwissprotQ8GY421e-110NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2K1YFN30.0A0A2K1YFN3_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-112NAC domain containing protein 25