PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0046s0430.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 164aa MW: 17898.9 Da PI: 10.5778

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0046s0430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.1	2.9e-36	11	70	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprC+st tkfC ynny+lsqPr+fCk+CrryWt+GG+lr+vPvGgg+rkn k+s SapurV1A.0046s0430.1.p 11 TEPLPCPRCNSTTTKFCNYNNYNLSQPRHFCKSCRRYWTQGGTLRDVPVGGGTRKNSKRS 70 67899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	12	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-31	13	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.136	14	68	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	16	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
METTHHPAKT TEPLPCPRCN STTTKFCNYN NYNLSQPRHF CKSCRRYWTQ GGTLRDVPVG 60 GGTRKNSKRS RSTSNNSPSM STSSSNSTSL NSAPLTAFTT THEPESMPMV LPSTIDSGLA 120 GVKTEVLAGL ENKWRRFDEP GTFRNARNGS RGVPARISGT DRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0046s0430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006375014.1	3e-60	dof zinc finger protein DOF1.6
TrEMBL	B9MVJ0	7e-59	B9MVJ0_POPTR; Uncharacterized protein
STRING	POPTR_0014s03590.1	1e-59	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	2e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0046s0430.1.p