PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0047s0660.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 703aa    MW: 75534.2 Da    PI: 8.4281
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0047s0660.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.82e-30103187187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e gf+r++k+Ckek+en++k+yk++keg+ +r+  + +++++f+qlea
  SapurV1A.0047s0660.2.p 103 RWPRQETLALLQIRSEMDATFRDATLKGPLWEDVSRKLAEMGFKRNAKKCKEKFENVHKYYKRTKEGRAGRQ--DGKRYRFFSQLEA 187
                             8*********************************************************************85..5556*******85 PP
2trihelix105.14.9e-33520605187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+ k+r +e+ +tcpyf++l+a
  SapurV1A.0047s0660.2.p 520 RWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYRRSAKRCKEKWENINKYFKKVKESHKNR-PEDAKTCPYFHELDA 605
                             8********************************************************************98.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.015100162IPR001005SANT/Myb domain
CDDcd122032.76E-28102167No hitNo description
PfamPF138371.7E-20102188No hitNo description
PROSITE profilePS500906.504102160IPR017877Myb-like domain
PROSITE profilePS500907.039513577IPR017877Myb-like domain
SMARTSM007170.015517579IPR001005SANT/Myb domain
PfamPF138371.0E-22519606No hitNo description
CDDcd122038.96E-31520584No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MQQEGGEGGS PPSQYGVSHQ QQGDAPITAP PSAALETHMQ QQQQQQQQVV EEASPISSRP  60
PATTSGVMNL DEFMRLSGSG GAEEDSGAGE DADRTGGVAS GNRWPRQETL ALLQIRSEMD  120
ATFRDATLKG PLWEDVSRKL AEMGFKRNAK KCKEKFENVH KYYKRTKEGR AGRQDGKRYR  180
FFSQLEALHN TTGGGGASAS VINLTGAAPQ QIATPLTSSL DVAPVSVGFP MPISSSVRIP  240
PPSSQALQPA SNIGSMFPPD LGATAAAAAA PPAAGAGPAG ISFSSNGSSS SPSSEDDDDE  300
DEELLGGQPS ATAAGTSRKR KRAALSSARG ETHRMMEFFE GLMKQVMQKQ EAMQQRFLEA  360
IEKREQDRMI RDEAWKRQEM ARLSREHEIM AQERAISASR DAAIVAFLQK ITGQTIHLPT  420
SVSMAPPFSL PPPPPPQLPE PVQITPLVTV STQPPPTQPQ TIPQPQVTLP QQQQQQYQQG  480
HRQHQLSISS DIVMAVPEQQ RAPQEIGSGG GSGSEPASSR WPKPEVLALI KLRSGLETRY  540
QEAGPKGPLW EEISAGMQRM GYRRSAKRCK EKWENINKYF KKVKESHKNR PEDAKTCPYF  600
HELDALYRKK ILGGSSGGGG GGGGSTSTSG FDSQSRPQEQ QQQQESLKLD PMPHPMQQPP  660
QQTQATESQN KNGAGGAVQA SNIGLSGSLP GEGNGGASKK TS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145153KRNAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0047s0660.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024436869.10.0LOW QUALITY PROTEIN: trihelix transcription factor GTL1
TrEMBLG8G9Q90.0G8G9Q9_POPCN; GTL1
STRINGPOPTR_0001s45870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.18e-51GT-2-like 1