PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0048s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 259aa    MW: 29581.9 Da    PI: 4.8303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0048s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
  SapurV1A.0048s0160.1.p 14 KGAWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNYL 61
                            79******************99************************97 PP
2Myb_DNA-binding56.56.4e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+ T+eE+e +v ++k lG++ W++Ia+ ++ gRt++++k++w++ 
  SapurV1A.0048s0160.1.p  67 RGNYTKEEEETIVSLHKTLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                             899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.805961IPR017930Myb domain
SuperFamilySSF466891.2E-2911108IPR009057Homeodomain-like
SMARTSM007174.2E-91363IPR001005SANT/Myb domain
PfamPF002498.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-241568IPR009057Homeodomain-like
CDDcd001671.03E-81661No hitNo description
PROSITE profilePS5129425.06262116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002495.6E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2569115IPR009057Homeodomain-like
CDDcd001675.27E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRAPCCDKT GLKKGAWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLQRCG KSCRLRWLNY  60
LRPNIKRGNY TKEEEETIVS LHKTLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRSKNKS  120
AAEKEMSSED DLSPNDKNQL EQDTEETDIN TQNPGSTTQI IESPARTLSP QRASPGDFSF  180
VDNIPATNWD LISDDDFAFL DAYEVPGGNF WTEPFLSDDY FMPNDFLAPL VETDHSPFYY  240
GEISSPFGFI NMDDCNLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0048s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048479.11e-156PREDICTED: myb-related protein Myb4-like
TrEMBLB9I6H81e-147B9I6H8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14560.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-62myb domain protein 15