PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0048s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 238aa    MW: 27139 Da    PI: 4.6429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0048s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.5e-151461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W+ eEde+l ++++++G  +W+  ++  g+ R++k+c++rw +yl
  SapurV1A.0048s0170.1.p 14 KGSWSIEEDEKLRNYIQKYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                            799*****************99************************97 PP
2Myb_DNA-binding49.69.4e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg +++eE  l+++ +++lG++ W+ I+ +++ gRt++++k++w++ 
  SapurV1A.0048s0170.1.p  67 RGDFSEEENNLIIQMHEELGNK-WSIISGKLP-GRTDNEIKNHWHTN 111
                             899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-23764IPR009057Homeodomain-like
PROSITE profilePS5129416.563961IPR017930Myb domain
SuperFamilySSF466891.12E-3011108IPR009057Homeodomain-like
SMARTSM007178.7E-111363IPR001005SANT/Myb domain
PfamPF002492.4E-131461IPR001005SANT/Myb domain
CDDcd001673.43E-91661No hitNo description
PROSITE profilePS5129425.1362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2465116IPR009057Homeodomain-like
SMARTSM007172.2E-1466114IPR001005SANT/Myb domain
PfamPF002494.9E-1467111IPR001005SANT/Myb domain
CDDcd001673.14E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVRSASIDKN GLRKGSWSIE EDEKLRNYIQ KYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPDVKRGDF SEEENNLIIQ MHEELGNKWS IISGKLPGRT DNEIKNHWHT NLSKRVKPNQ  120
PVSSEVMNED SVSVGAPSKS DHTEKNVENF PPSSQEISCS ELSSVSNDSV LGMNTVAEDC  180
VSSMEIFQDS GSDFWDLPFL PDNNYNQDGY ESLFLTEDGY MSFYASAYDA DAIDWIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0048s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439116.11e-150transcription factor MYB15
TrEMBLA0A2K1Y5V71e-148A0A2K1Y5V7_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14550.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-54myb domain protein 9