PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0049s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 340aa    MW: 37912.4 Da    PI: 7.7045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0049s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  SapurV1A.0049s0100.1.p 14 KGPWSPEEDSKLKQYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                            79*********************************************97 PP
2Myb_DNA-binding33.59.5e-1169111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g ++  Ed  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0049s0100.1.p  69 GEFSDVEDRVICSLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                             78999****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.067966IPR017930Myb domain
SuperFamilySSF466891.13E-2611109IPR009057Homeodomain-like
SMARTSM007174.3E-131364IPR001005SANT/Myb domain
PfamPF002497.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001673.03E-101662No hitNo description
SMARTSM007171.0E-967115IPR001005SANT/Myb domain
PROSITE profilePS5129415.16367117IPR017930Myb domain
PfamPF002492.3E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKQYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDVEDRVIC SLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMAM  120
APQSQRKSPP FPSSHQTDPP LPSHSLLSIY KDAGASFSYY SQNKSFTGFD PISQTPSGLL  180
SNNSVSLATN SLLFQPNSQE GLLFSPMQYY HPAVKDNFLV FGSEASCSSN SDGNCSQISY  240
GRSEIKQEDM GFHSLISNNG YENQNQNFML SYGNRGAENL NQWVEKPNGN IGETPLDYDL  300
VEDVGQLISS GSDNNNINLC IDSLLIDEKK TQEKAMYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0049s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314299.10.0transcription factor RAX2
TrEMBLB9HQM80.0B9HQM8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-77myb domain protein 36