PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0049s0230.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 172aa MW: 18523.9 Da PI: 5.6952

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0049s0230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96	7.1e-30	14	79	5	70
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 ++ +++h kv+gRdRR+Rl+++caar+F++++eLG ++d++tieWLl+ a+p i + tg++ + SapurV1A.0049s0230.1.p 14 PKPRKDRHVKVNGRDRRIRLPINCAARVFQMTRELGNKTDGETIEWLLRVAEPTIVAVTGNGIGPT 79 5788*********************************************************55554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	23.517	17	71	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.9E-26	17	78	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MNKASTSKTK VADPKPRKDR HVKVNGRDRR IRLPINCAAR VFQMTRELGN KTDGETIEWL 60 LRVAEPTIVA VTGNGIGPTG ANLRYSQAAV VNTAPPVSYS SDLHPLSSAG LSSPLMDPSV 120 EPIQGLISRN CVVSGDEPLS FTSEFDNLET DFDMDFPVSD MFPSVPGNDH A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0049s0230.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314294.3	2e-93	transcription factor TCP7
Swissprot	Q9FMX2	5e-29	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2K1Z0T1	4e-92	A0A2K1Z0T1_POPTR; Uncharacterized protein
STRING	XP_002529440.1	3e-44	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-31	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0049s0230.1.p