PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0049s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 693aa    MW: 76718.6 Da    PI: 7.0331
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0049s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.5e-22112212198
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f k+lt+sd+++ g +++p+ +ae++      + +++ + tl+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++v
  SapurV1A.0049s0400.1.p 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldySADPPLQ-TLIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIV 197
                             89*****************************95566664.9********************************************** PP

                             EEE-SSSEE..EEEEE- CS
                      B3  82 Fkldgrsefelvvkvfr 98 
                             F +   +++ l+ +++r
  SapurV1A.0049s0400.1.p 198 FLR--AENGDLCDGIRR 212
                             *93..366655666655 PP
2Auxin_resp1156.7e-38276358283
              Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a  a+++++F+vvY+Prast+eF+vk+++v++a+ + ++ GmRfkmafetedss++++ +Gtv++++ +dpvrWpnS+Wr+L+
  SapurV1A.0049s0400.1.p 276 AGLAANGKPFQVVYYPRASTPEFCVKASSVRAAMAIGWCSGMRFKMAFETEDSSRISWfMGTVTSIQVADPVRWPNSPWRLLQ 358
                             66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-36107219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29109214IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-19111198No hitNo description
PfamPF023622.1E-20112212IPR003340B3 DNA binding domain
SMARTSM010193.9E-19112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.125112214IPR003340B3 DNA binding domain
PfamPF065078.8E-33275358IPR010525Auxin response factor
PROSITE profilePS5174517.061597675IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MKETEKSLDP QLWQACAGSM VQIPPPNSIV FYFPQGHAEH SQSPVNFPQK IPSLILCRVA  60
TVKFLADPDT DEVYAKIGFV PLPNTDLDLT HDRELCGNGN DGDNCPDKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPLQ TLIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCDGI RRSRRGSGSG SGSGPESSLT IGWNSNNATC  240
AIPYDGFSLF VKEDEMRNGR MKGRGRVRPE EVLEAAGLAA NGKPFQVVYY PRASTPEFCV  300
KASSVRAAMA IGWCSGMRFK MAFETEDSSR ISWFMGTVTS IQVADPVRWP NSPWRLLQVT  360
WDEPDLLQNV KHVSPWLVEL VSNMPVIHLS PFSPPRKKLR FPQQLDFSLD LQFQLPPFSG  420
NPHGPSSPLS CLSDNTPAGI QGARHAQFGI SLSDIQFNNK LQPGKFLSSL QRFNPHSRNS  480
ETYLTGHTNS NENISCLLTM GNSNPNLEKS DNVKKHQFLL FGQPILIEQH ISHSCSTDAV  540
SQVINETKSS DESPNKEKIS DVLLSAPENK ISQVKSCGTG FSWHQSLHSA SEICKDTGSC  600
KAFLESEDVG RTLDLSALCS YEELHGKLAN MFGIERSEMP SHVHYRDATG AVKQIGDEPF  660
SVFMKTAKRL TILMNRASTE WWEGMDQRDA KC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-77837951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0049s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010056.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K1Z1400.0A0A2K1Z140_POPTR; Auxin response factor
STRINGPOPTR_0009s02020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]