PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0051s0090.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 625aa    MW: 71082.1 Da    PI: 6.7569
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0051s0090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.6e-2087142156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t+ q++++e++F+++++p+ ++r++L+++lgL  rqVk+WFqNrR+++k
  SapurV1A.0051s0090.2.p  87 KKRYHRHTERQIQQMEAMFKECPHPDDKQRRRLSHELGLHPRQVKFWFQNRRTQMK 142
                             688999***********************************************998 PP
2START149.52.9e-472855102206
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWde 74 
                             la++ ++elvk+  a ep+W k    eng+evl  +e ++                + ea r+++vv+m++ +lv  +ld + +W e
  SapurV1A.0051s0090.2.p 285 LALSSMDELVKMCHAMEPLWIKNN--ENGKEVLNLEEHARMfpwpsnrkqnssavMKNEATRDCAVVIMNSINLVDAFLDAN-KWME 368
                             57899*****************99..*********9998889************999*************************.**** PP

                             T-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSE CS
                   START  75 tla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpS 150
                              ++    +a+t++vi++g     g l+lm aelq lsplvp R+ +f+R+++q  ++g+w ivd  +ds  +++ +ss+   +++pS
  SapurV1A.0051s0090.2.p 369 LFPsivaRAKTVQVITTGvcgasGSLHLMHAELQDLSPLVPtRETYFLRFCQQnVEEGTWGIVDFPLDSFHDNT-QSSFPMYRRRPS 454
                             **99999**********************************************99*******************.77777777**** PP

                             EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             g++i++++ng+s++tw+eh++ +++ +h+++ + + sg+a+ga +w+a lqrqce+
  SapurV1A.0051s0090.2.p 455 GCVIQDLPNGYSRLTWIEHAEIEDKPVHQIFGQYIYSGMAFGAHRWLAVLQRQCER 510
                             ******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1975144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2180151IPR009057Homeodomain-like
PROSITE profilePS5007116.95784144IPR001356Homeobox domain
SMARTSM003891.5E-1985148IPR001356Homeobox domain
PfamPF000461.1E-1787142IPR001356Homeobox domain
CDDcd000863.94E-1887145No hitNo description
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PROSITE profilePS5084839.354275513IPR002913START domain
SuperFamilySSF559614.12E-27277512No hitNo description
CDDcd088751.10E-109283509No hitNo description
SMARTSM002342.6E-28284510IPR002913START domain
PfamPF018521.4E-39286510IPR002913START domain
SuperFamilySSF559613.43E-5528613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MFGDCQVMSK MGGNVVSSDT IYSLPVGNPN FNFMSSLPFH TFSPIISKEE DGLVMTGKEE  60
MESGSGCEQL EENSGNEQES SEPPPKKKRY HRHTERQIQQ MEAMFKECPH PDDKQRRRLS  120
HELGLHPRQV KFWFQNRRTQ MKAQHDRSDN TILRAENESL KNDNYRLQAE LRNLFCPDCG  180
GQSMLGELPF EELRLEHARL REELERVCSI ASRYGIGRPI HSMLPAPAFV PPSLDLDMSI  240
YSRPFPESLG TCTDTVPMPM FPEPSSFPEA GMVLMEEGKG FAMGLALSSM DELVKMCHAM  300
EPLWIKNNEN GKEVLNLEEH ARMFPWPSNR KQNSSAVMKN EATRDCAVVI MNSINLVDAF  360
LDANKWMELF PSIVARAKTV QVITTGVCGA SGSLHLMHAE LQDLSPLVPT RETYFLRFCQ  420
QNVEEGTWGI VDFPLDSFHD NTQSSFPMYR RRPSGCVIQD LPNGYSRLTW IEHAEIEDKP  480
VHQIFGQYIY SGMAFGAHRW LAVLQRQCER VASLMARNIS DLGVIPSPEA RVNMMRLAQR  540
MIRTFCLNIS TSSGQSWTAL PDSYDDTVRV TTRKTSAPGQ PHRVIISAVS TTWLPYPHFQ  600
VFELLRDKHR RSQVPVDRAI KKLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117DKQRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0051s0090.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291836e-49GU129183.1 Populus balsamifera transcription factor HEX (OCLHD) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024465375.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024465379.10.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A2K2BX620.0A0A2K2BX62_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]