PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0051s0530.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18494.8 Da    PI: 9.4691
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0051s0530.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.9e-11957149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            kri+n+  r+vt+sk r+g++KKA  LS    +++a++  s +g++ ++
  SapurV1A.0051s0530.1.p  9 KRIQNEDYRKVTYSKLRAGLIKKARFLSSRSKTQIAIVSCSISGRILTF 57
                            79*******************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.035161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-17276IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-91057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MTRRKIEIKR IQNEDYRKVT YSKLRAGLIK KARFLSSRSK TQIAIVSCSI SGRILTFGHP  60
SVDSVVDQFL DSYTIDSRGS SSNESSRDNM HGPSSSSEGV VDRKEGRRSW WALPFEEMDL  120
DMDGLRQYTA SLEILKSNVV SQLKEMEERA SLARDFTGLL DAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0051s0530.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451981.17e-89agamous-like MADS-box protein AGL61
TrEMBLA0A2K2BEB94e-83A0A2K2BEB9_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2316234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-18AGAMOUS-like 61