PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0052s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 194aa    MW: 21395.2 Da    PI: 9.7204
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0052s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-054668123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C++ F ++  L  H++ H
  SapurV1A.0052s0050.1.p 46 FECHFCNRAFANSQALGGHQNAH 68
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-54372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.59E-74373No hitNo description
PROSITE profilePS5015712.034673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAESSTPSQE SDHKTTSKLK LFGFPLTEQD DQILSKTGNT LDSRKFECHF CNRAFANSQA  60
LGGHQNAHKR ERQRARRTQY LCERRFMAAA QVLCSHAVKS PPFIYRRGSI TRNSTAAAAA  120
AAEFRPQIAS YYPSQPLLFP SSPPDHHFPS QIYIAQPLHD SAKMPSFIKV PGKLCSKDDG  180
VGVDLCLKLT PSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0052s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041621.11e-108PREDICTED: uncharacterized protein LOC105137538
TrEMBLA0A1L6K5I31e-106A0A1L6K5I3_POPTO; Uncharacterized protein
STRINGPOPTR_0014s11880.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.13e-13zinc finger protein 8