PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0052s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 134aa    MW: 14697 Da    PI: 10.2871
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0052s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-172862135
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                            C+ C+tt Tp+WR gp g++tLCnaCG+++rkk++
  SapurV1A.0052s0100.1.p 28 CTDCQTTRTPCWRGGPAGPRTLCNACGIRQRKKRR 62
                            ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.8862258IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-132280IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-132261No hitNo description
Gene3DG3DSA:3.30.50.109.4E-142562IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-122787No hitNo description
PfamPF003203.4E-152862IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDFNSKGLES EDMDNTQPSK GNEIKRRCTD CQTTRTPCWR GGPAGPRTLC NACGIRQRKK  60
RRAVLGLDKG VARGSKKKTA KTSNSSNLGV SLKLDLMGFR RDGVFQEDWK RKLGEEEQAA  120
ILLMAMSCGL VCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0052s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041705.14e-79PREDICTED: GATA transcription factor 16-like
TrEMBLB9I9M53e-76B9I9M5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11940.14e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-28GATA transcription factor 16