PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0052s0830.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 136aa    MW: 15274 Da    PI: 5.0355
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0052s0830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB170.91.5e-5330126197
                   NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                             v+eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easd c++ekrkt+ngdd++wal++lGf+dy eplk yl
  SapurV1A.0052s0830.1.p  30 VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDWCHKEKRKTVNGDDICWALSSLGFDDYSEPLKRYL 116
                             58************************************************************************************* PP

                   NF-YB  88 kkyrelegek 97 
                              +yre+ege+
  SapurV1A.0052s0830.1.p 117 YRYREVEGER 126
                             ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-5127132IPR009072Histone-fold
SuperFamilySSF471136.99E-4033134IPR009072Histone-fold
PfamPF008081.2E-2736100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.6E-186482No hitNo description
PRINTSPR006153.6E-1883101No hitNo description
PRINTSPR006153.6E-18102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVDNIGSNNS DREWLKHDFA GGSTSDDGIV KEQDRLLPIA NVGRIMKQIL PPNAKISKEA  60
KETMQECVSE FISFVTGEAS DWCHKEKRKT VNGDDICWAL SSLGFDDYSE PLKRYLYRYR  120
EVEGERAGHS KASND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4430121192Transcription factor HapC (Eurofung)
4g92_B4e-4430121192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0052s0830.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321022.22e-90nuclear transcription factor Y subunit B-5
SwissprotO822484e-59NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLB9I9U44e-89B9I9U4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12710.17e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-61nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]