PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0053s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 294aa    MW: 32717.3 Da    PI: 5.8034
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0053s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.8e-07750239
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            ++r C+ ++e  + l+C+ ++  lC +C  e H+       Ht+
  SapurV1A.0053s0110.1.p  7 QKRLCDYCNETTALLYCRADSAKLCLSCDHEVHSTnqlfskHTR 50
                            7899******99*********************66788888886 PP
2zf-B_box19.12.7e-065296442
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                              C++++  +++++Ce+ ++ lC+ C  e H g       H+++p+
  SapurV1A.0053s0110.1.p 52 LLCDDCHASPVSIYCETEHSALCQICDCERH-GlssspstHNRRPI 96
                            68*****************************.77888999988876 PP
3CCT62.21.7e-21249290142
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                             R+ a++RYkeKr+tR+++K+irYesRK++Ae+R R+KGrF+k
  SapurV1A.0053s0110.1.p 249 RDSAISRYKEKRQTRRYDKRIRYESRKVRAETRTRIKGRFAK 290
                             899*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-13653IPR000315B-box-type zinc finger
PROSITE profilePS5011910.836653IPR000315B-box-type zinc finger
PfamPF006432.1E-5750IPR000315B-box-type zinc finger
CDDcd000212.28E-7953No hitNo description
PROSITE profilePS5011910.5944996IPR000315B-box-type zinc finger
CDDcd000213.96E-55396No hitNo description
SMARTSM003360.295496IPR000315B-box-type zinc finger
PfamPF062037.1E-16249290IPR010402CCT domain
PROSITE profilePS5101714.852249291IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNTKPQQKRL CDYCNETTAL LYCRADSAKL CLSCDHEVHS TNQLFSKHTR LLLCDDCHAS  60
PVSIYCETEH SALCQICDCE RHGLSSSPST HNRRPIEGFT GCPSGNELME ILGFEDPGHK  120
QSLFFSEETD GFMGSGLDDD YSDLFVWDSP AVCIDDLIMS SDSGPNFQAS GAPPLPKENG  180
EAANQVFLPS TLPRSNFEES CAVPDKETNI SDSASHINDG REAEPQPRTT GTLPVLPNAG  240
THELSSQDRD SAISRYKEKR QTRRYDKRIR YESRKVRAET RTRIKGRFAK LGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0053s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440717.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_024440718.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_024440719.10.0zinc finger protein CONSTANS-LIKE 13
SwissprotO822563e-70COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A3N7FYS70.0A0A3N7FYS7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12900.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-72B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]