PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0054s0360.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 657aa    MW: 75809.1 Da    PI: 6.7528
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0054s0360.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.98e-2465156190
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                             ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ 
  SapurV1A.0054s0360.3.p  65 EYYSNFARKNGFSIRKARSTESQHLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSIRCGCDAKLYLTKEIvdgLAQWYVSQFSNV 150
                             69********************9998.******************************************998756679********* PP

                    FAR1  85 HnHela 90 
                             HnHel 
  SapurV1A.0054s0360.3.p 151 HNHELL 156
                             ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2165156IPR004330FAR1 DNA binding domain
PfamPF105519.4E-24288381IPR018289MULE transposase domain
PROSITE profilePS509669.594530565IPR007527Zinc finger, SWIM-type
PfamPF044344.5E-7537564IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4540567IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MKPSNNIWIP RQQCPCGDWK CYIKYEGDDQ TSASSQTVKS ETTSSELVFT PYVGQIFKSD  60
DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS  120
IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL  180
LSKAGFPINR IVKVLELEKG VRPGQLPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL  240
ELLEACKSVA ERDPDFAYDY TTDENDKVEN IAWSYGDSVR AYALYGDVVT FDTTYRSITY  300
GLLLGVWFGM DNHGRAILYG CVLLQDESSH SFTWALQTFV RFIRGRHPQT IVTDMELALR  360
DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRFELVSD KHMALLFSYR GFWSISYIRG  420
SFLARTMTPE FSQSLHAFLK RILSGQTCLQ VFFEQIGLAA PAGNQTRDGM RYMHIKTCLP  480
IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ EMADGSYLAR HFKKMDGECL VIWMPEDEQI  540
HCSCKEFEHS GILCRHSLRL LEVKNYFQLP ERYFPPRWRR DQSLFPMDDQ NSQSNNDDCA  600
QALHALTETL LTESLTSKER FNHVQREITG LLAEVRSMPV AEELSLNMPG NNVSET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0054s0360.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010202.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLB9IAT40.0B9IAT4_POPTR; FAR1 family protein
STRINGcassava4.1_002824m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]