PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0054s0630.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 415aa    MW: 45133 Da    PI: 4.8336
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0054s0630.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.4e-06443538
                zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                            +C+ ++e++   +C+++   lC +C  + H+       H+
  SapurV1A.0054s0630.2.p  4 VCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHS 43
                            6*****************************5566666676 PP
2zf-B_box24.36.2e-084489241
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                            ++  C+++++++++  C + +  lC++C   +H g       H++++
  SapurV1A.0054s0630.2.p 44 RNLLCERCNSQPAIVRCAEERISLCQNCDWIGH-GtstsastHRRQT 89
                            6789**************************99*.5477888887765 PP
3CCT63.37.5e-22357400144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             R  a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  SapurV1A.0054s0630.2.p 357 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 400
                             889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
SMARTSM003365.8E-8447IPR000315B-box-type zinc finger
CDDcd000212.05E-6444No hitNo description
PROSITE profilePS501198.9444390IPR000315B-box-type zinc finger
CDDcd000211.90E-44790No hitNo description
SMARTSM003363.14890IPR000315B-box-type zinc finger
PfamPF062031.9E-16357399IPR010402CCT domain
PROSITE profilePS5101715.368357399IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGYVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRNLLCER CNSQPAIVRC  60
AEERISLCQN CDWIGHGTST SASTHRRQTI SCYSGCPSAS ELSSIWSFVL DFPSRGESTC  120
EQELGLMSIA ENSTTNSWGE NTIDQNASGA VEVNDRNEIA KSGVWHGSSS IPESSSLPNN  180
PDQPTGSANT SLPKLYCPGT KCPVPYDDAN LYEEFNMDEM DLSLENYEEL FGVTLNNSEE  240
LLENGGIDSL FGTKDMSGAD SNCQGAVAAE VSSVGLVNAI QPASSNAASA DSMMSNKTEP  300
ILCLTEKQGH SNLSFSGLNV ESSAADYQDC GASSMLLMGE PPWCPQCPES PFSSANRSDA  360
VMRYKEKKKT RKFEKKVRYA SRKARADVRR RVKGRFVKAG DAYDYDPLSQ TRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0054s0630.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149951e-174AC214995.1 Populus trichocarpa clone POP004-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441090.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-149COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2K1XX940.0A0A2K1XX94_POPTR; Uncharacterized protein
STRINGEOX935730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-118CONSTANS-like 9