PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 259aa    MW: 29078.8 Da    PI: 8.4885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT  Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  SapurV1A.0059s0150.1.p 14 RGPWTSREDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                            89******************************99************97 PP
2Myb_DNA-binding53.27.1e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0059s0150.1.p  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                             7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.453961IPR017930Myb domain
SuperFamilySSF466897.34E-3011108IPR009057Homeodomain-like
SMARTSM007175.9E-121363IPR001005SANT/Myb domain
PfamPF002493.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-231568IPR009057Homeodomain-like
CDDcd001671.66E-91661No hitNo description
PROSITE profilePS5129425.96762116IPR017930Myb domain
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2669116IPR009057Homeodomain-like
CDDcd001671.02E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRAPCCSKV GLQRGPWTSR EDTLLINYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLGKRVKNSK  120
AGNNSHRIRK RKQRELDNEI GEAAAAKIKI HLPKATRVSP SSVAKNININ IQRMMGSSSS  180
HENMDDYANW GISGLELASN DGEAWAFNGE EFAGLVHDHD STCPSSLPDD IMLGDIFEEY  240
QELLKQDDHG QFDSLIIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0059s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304570.11e-158transcription factor MYB4
TrEMBLB9GXU61e-156B9GXU6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14420.11e-157(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-66myb domain protein 3