PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0380.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 54aa    MW: 6259.23 Da    PI: 10.1176
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.31.9e-161391856
                            HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            +Fe+++ p  e++++LA+++gL+ rqV +WFqNrRa+ k
  SapurV1A.0059s0380.1.p  1 MFESKSRPEPEMKQQLADEIGLEPRQVAIWFQNRRARLK 39
                            699**********************************98 PP
2HD-ZIP_I/II73.24.8e-241491765
             HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyea 65
                            +Fe++++ epe K++la e+gl+prqva+WFqnrRAR ktkq+Ek+++ 
  SapurV1A.0059s0380.1.p  1 MFESKSRPEPEMKQQLADEIGLEPRQVAIWFQNRRARLKTKQVEKECSL 49
                            699999*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-4145IPR001356Homeobox domain
PfamPF000467.0E-14139IPR001356Homeobox domain
PROSITE profilePS5007114.965141IPR001356Homeobox domain
SuperFamilySSF466895.99E-14248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-16246IPR009057Homeodomain-like
CDDcd000866.21E-10242No hitNo description
PRINTSPR000317.5E-61221IPR000047Helix-turn-helix motif
PROSITE patternPS0002701639IPR017970Homeobox, conserved site
PRINTSPR000317.5E-62137IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MFESKSRPEP EMKQQLADEI GLEPRQVAIW FQNRRARLKT KQVEKECSLG KVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13341RRARLKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:11374882, ECO:0000269|PubMed:15604708}.
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0059s0380.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
UniProtINDUCTION: By water deficit, by abscisic acid (ABA), by cold and salt stress. {ECO:0000269|PubMed:15369784, ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:9617808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002297947.15e-21homeobox-leucine zipper protein ATHB-7
RefseqXP_011026784.16e-21PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468976e-15ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
SwissprotQ9M2765e-15ATB12_ARATH; Homeobox-leucine zipper protein ATHB-12
TrEMBLA0A2K2B7968e-23A0A2K2B796_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11380.12e-20(Populus trichocarpa)
STRINGPOPTR_0003s14700.12e-20(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4008622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-17homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]
  3. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]