PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0060s0510.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 329aa MW: 36191.1 Da PI: 6.6811

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0060s0510.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	7.2e-16	51	100	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+++P++ ++K + a+ L +++eY+++Lq SapurV1A.0060s0510.1.p 51 RSKHSVTEQRRRSKINERFQILRDIVPHS----DQKRDTASFLLEVIEYVQYLQ 100 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-18	47	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-22	47	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.853	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.14E-14	51	104	No hit	No description
Pfam	PF00010	2.9E-13	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-12	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MRGKGNQNQD EEEYEEDEFS SRKDGPSSSF TVNNNNSSKD GKSNDKANAI RSKHSVTEQR 60 RRSKINERFQ ILRDIVPHSD QKRDTASFLL EVIEYVQYLQ QKVQKYEGPY QGWSSEPAKL 120 MPWRNSHWRL QSFGGHPQAI KNGSVPGETF PGKLDENNIA LTPAILPSTP NPVESDHVAC 180 KVLEHQPDLA NKVMPLPTPA PIQSVGLVAH PCQLPVSDAQ SAECPITSEM LNQQDLAIEA 240 GTINISSAYS QELLNTLAQS LHSAGVDLSQ ANISVQIDLG KRANRGLTSG TLTSKDPQNP 300 HPSKQTITHL REASGGEDSD QARKRLKT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0060s0510.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002312362.2	0.0	transcription factor BIM2 isoform X1
Refseq	XP_024462940.1	0.0	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-115	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9HIU8	0.0	B9HIU8_POPTR; Uncharacterized protein
STRING	POPTR_0008s11120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-91	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0060s0510.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]