PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0061s0350.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 657aa    MW: 71828.1 Da    PI: 6.5139
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0061s0350.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07251271526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ f++ GtC+ Gd C +aHg
  SapurV1A.0061s0350.2.p 251 PCPEFRK-GTCQKGDYCEYAHG 271
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.1E-1235165IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.31E-1155141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.24961136IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00276191IPR002110Ankyrin repeat
PfamPF127961.5E-761130IPR020683Ankyrin repeat-containing domain
CDDcd002043.59E-1163160No hitNo description
SMARTSM002484696128IPR002110Ankyrin repeat
SMARTSM003561.9E-4246272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.699246273IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-5251271IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4251274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4278310IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869281305IPR000571Zinc finger, CCCH-type
SMARTSM0035637281304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MEDKSYSQKD SLFYKCSVLL ELSASDDLAG FKTEVEQKGL DIDEASYWYG RRNGLKKMGF  60
EERTPLMIAA LFGSIHVLKY IIETGKVKVN KACGSDRVTA LHCAVAGCAD SSVGDVKLLL  120
DASADPNSVD GNGNKPGDLF APSSKLMCNS RKKLIELLLK GESLSEDEEE KLIIMPQVAK  180
EGIEKKEYPL DVTLPDINDG IYGTDEFRMY SFKVKPCSRA YSHDWTECPF VHPGENARRR  240
DPKKYPYSCV PCPEFRKGTC QKGDYCEYAH GVLESWLHPA QYRTRLCKDE TGCARKVCFF  300
AHKPEELRPV YAATGSAMPS PRSTSSAVDM ATLSSLALGS SSLSLPGTST PPMSPLAAAS  360
SSPKSGGLWQ NKVSLTPPAL QQPGSRLKTA FSARDLDLEM ELLGLESYSS QLQQQQQHLR  420
DEMSGLSSPT HWSNRMADLK PTTLDDVFGS LDPSIMSPMQ GVTQLQSPNG LQIRQNMNQL  480
RSSYPVANLS SSPARNPTSY GFDTSAAVAA AVMNSRSSAF AKRSQSFIDR GAVPNRFGLT  540
AAANSAPMMS SNLSDWNSPN GKLDWGIQGD ELNKLKKSAS FGFRSNNNLA TTAASLTASH  600
INEPDVSWVN SLVKDVPPAG STFFGDEKQY RLREGVPESL SPWMEQMYIE QEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0061s0350.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466053.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2K1YWF00.0A0A2K1YWF0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein