PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0061s0470.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 256aa    MW: 28080.9 Da    PI: 8.3806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0061s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1267113354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r+h+++E+rRRdri   +  Lr+l+Pk+     +K++Ka+ L  A++++k+L
  SapurV1A.0061s0470.1.p  67 RSHSQAEKRRRDRISAQLGILRKLIPKS-----EKMDKAALLGSAIDHVKNL 113
                             78*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.89464113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-1365122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-1067113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1467116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-1067116No hitNo description
SMARTSM003536.8E-1170119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.02E-6160196No hitNo description
SuperFamilySSF550213.62E-5160226No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-5160223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MENHHFPCWP AAPAEANWAQ TSAAVYDESF FIPDPSHASA NFQVNGFSSW AIPIQEASED  60
KAASSSRSHS QAEKRRRDRI SAQLGILRKL IPKSEKMDKA ALLGSAIDHV KNLKQKATEI  120
SRTFTVPSEV DEVTVDCDVS QVTTPPSTTK DKDITFIRAS VCCDDRPELF SELITVLKGL  180
GLAIVRADIA SVGGRVKSIL VLCSECSEEG SVSISTIKKS LNLVLSRIAS PSMPSNYRIR  240
SKRQRFFLPP RFSEQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0061s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311240.11e-159transcription factor bHLH51 isoform X1
RefseqXP_024463294.11e-159transcription factor bHLH51 isoform X1
RefseqXP_024463295.11e-159transcription factor bHLH51 isoform X1
TrEMBLB9HHS91e-157B9HHS9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07090.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.16e-45bHLH family protein