PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0066s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 607aa    MW: 67289 Da    PI: 6.2217
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0066s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.92.8e-2864148187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW++qe+laL+++r++m+ ++r++  ++plWe+vs+k++e g++rs+k+Ckek+en+ k++k++k+g++++  ++ +++++fdqlea
  SapurV1A.0066s0020.1.p  64 RWPRQETLALLKIRSDMDVTFRDAGVNGPLWEDVSRKLAELGYNRSAKKCKEKFENVFKYHKRTKDGRSGK--QEGRNYRFFDQLEA 148
                             8********************************************************************96..56668*******85 PP
2trihelix101.18.9e-32432517187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k ev aLi +r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk ke++kkr +e+s+tcpyf+ql+a
  SapurV1A.0066s0020.1.p 432 RWPKVEVEALIGLRTNLDCKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKAKESNKKR-PEDSKTCPYFHQLDA 517
                             8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.1E-461123IPR001005SANT/Myb domain
CDDcd122038.25E-2663128No hitNo description
PfamPF138372.9E-1863148No hitNo description
PROSITE profilePS500907.00463121IPR017877Myb-like domain
SMARTSM007171.3429491IPR001005SANT/Myb domain
CDDcd122033.99E-27431496No hitNo description
PfamPF138375.9E-22431518No hitNo description
PROSITE profilePS500906.864431489IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MLGDSSSVLA TTTTALAACG GGGGEGNRES PPLDGSNHEG SNIDVGGEDD KGAIEGHRSF  60
GGNRWPRQET LALLKIRSDM DVTFRDAGVN GPLWEDVSRK LAELGYNRSA KKCKEKFENV  120
FKYHKRTKDG RSGKQEGRNY RFFDQLEAFE SHPPSLSSPL PLPLPPQPTK AHPPPVITIA  180
MSVINPSPNV AGNSHNTVPS TAAATLATNT SQAAVTSSIN LAAPPFPSAN PTICHPSQAT  240
NHPQTIIPSS FPNFSSDLIS NSPSSSTSSD VELQGRRKRK RKWKDFFERL MTEVIQRQEE  300
TQKRFLEAIE KRENERMVRE QSWRMQEMAR INREHEILAQ ERSIAATKDA AVMAFLQKLS  360
QQQNPGQVQN NPPPTPLPPT PSPALPPISQ QTPTPPHPLP VAQVPLPQPV ANLDITKSDN  420
GDQNFMSPSS SRWPKVEVEA LIGLRTNLDC KYQENGPKGP LWEEISAGMR KLGYNRNAKR  480
CKEKWENINK YFKKAKESNK KRPEDSKTCP YFHQLDALYK EKNKIDGPSN STQPQNNSVP  540
LMVLPEQQWP PAQQEHGPES VMEDLESDDH QNQEDEDEKL MDDEDEDEAS GYEIVASKQT  600
SMSTAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280RRKRKR
2275281RRKRKRK
3276281RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0066s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302180.20.0trihelix transcription factor GT-2
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2K2BEP70.0A0A2K2BEP7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-157Trihelix family protein