PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0066s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 421aa    MW: 48238.6 Da    PI: 6.6325
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0066s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92.1e-26121215183
                trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 
                             +Wt+++v++Li+a+++++e+  +++           +kk++W++vsk+m+ergf++sp+qC++k+++lnkryk+++++ +++ ++++
  SapurV1A.0066s0030.1.p 121 KWTDKMVRLLITAVSYIGEDGTSDCgggmrrkftvlQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQV 207
                             7*********************99888999999999**********************************************55888 PP

                trihelix  76 sstcpyfd 83 
                             +++ +++d
  SapurV1A.0066s0030.1.p 208 VENPALLD 215
                             88887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-23119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEGNLSQGGM IPSGASFGGL DLQGSMRVPH QAQHPHTVHH HQHPLHRQGS STLTSVEDGF  60
PLTMGFMHNS DQNISMTDYN KGDRGKNSVS DEDEPSYTEE GADGHNDAII GKKGTPWQRV  120
KWTDKMVRLL ITAVSYIGED GTSDCGGGMR RKFTVLQKKG KWKSVSKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKRLNDMLG RGTSCQVVEN PALLDIIDYL TEKEKDDVRK ILNSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ RSLQLALRSR DDHDNDDARR HLHDDLDEDD QEIETDDRDE  300
FEENHASHGG CRGIHGVSGG SAKRPRQSQG QEDAFSSESS RAVRLQKQWM ESRTLQLEEQ  360
KLQIQQEMLE LEKQRFKWQR FSKKRDRELE KSRMENERMK LENEQMALEL KRKEMGAGFN  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0066s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451284.10.0uncharacterized protein LOC7467820
TrEMBLA0A2K2BEQ00.0A0A2K2BEQ0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-143sequence-specific DNA binding transcription factors