PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0066s0430.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 152aa    MW: 17067.9 Da    PI: 4.8968
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0066s0430.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1642e-51398297
                   NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
                            +eqd++lPianv+rimk++l  nakisk+ak+t+qec++efisfvt+easdkcq+e+rkt+ngdd++wal+tlGf+dy+e++  yl+ky
  SapurV1A.0066s0430.1.p  3 EEQDKLLPIANVGRIMKQILTPNAKISKEAKQTMQECATEFISFVTGEASDKCQKENRKTVNGDDICWALSTLGFDDYAEAIVRYLHKY 91
                            69*************************************************************************************** PP

                   NF-YB 91 relegek 97
                            re+e+e+
  SapurV1A.0066s0430.1.p 92 REVERER 98
                            ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-492119IPR009072Histone-fold
SuperFamilySSF471132.17E-385120IPR009072Histone-fold
PfamPF008082.6E-26972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-173654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-175573No hitNo description
PRINTSPR006151.3E-177492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEEEQDKLLP IANVGRIMKQ ILTPNAKISK EAKQTMQECA TEFISFVTGE ASDKCQKENR  60
KTVNGDDICW ALSTLGFDDY AEAIVRYLHK YREVERERSA NQHRSSAGPE QDNIEDSSHV  120
SCQPQQQIEA RNGIEFRILD KGNGSSFTNP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-40493392Transcription factor HapC (Eurofung)
4g92_B3e-40493392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0066s0430.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319001.17e-95nuclear transcription factor Y subunit B-4
SwissprotO040275e-54NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLB9I7Q32e-93B9I7Q3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s02030.13e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-56nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]