PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0068s0490.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 445aa    MW: 48058.9 Da    PI: 7.5151
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0068s0490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08122142526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C ++ + G+C++Gd+C+F H+
  SapurV1A.0068s0490.1.p 122 VCTYWVQ-GHCNRGDTCRFLHS 142
                             7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0143763IPR000571Zinc finger, CCCH-type
SMARTSM003560.573962IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-7120142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6121141IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-6121142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.105.4E-17142256IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.8E-6148187IPR001680WD40 repeat
SuperFamilySSF509784.58E-47149435IPR017986WD40-repeat-containing domain
PfamPF004001.1E-4151187IPR001680WD40 repeat
PROSITE profilePS5008213.85155196IPR001680WD40 repeat
PROSITE profilePS5029421.357155357IPR017986WD40-repeat-containing domain
PROSITE patternPS006780174188IPR019775WD40 repeat, conserved site
PRINTSPR003203.5E-6174188IPR020472G-protein beta WD-40 repeat
SMARTSM003202.8227264IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.1E-31257435IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0074271308IPR001680WD40 repeat
PROSITE profilePS5008211.31278317IPR001680WD40 repeat
PRINTSPR003203.5E-6295309IPR020472G-protein beta WD-40 repeat
SMARTSM003202.9E-4311348IPR001680WD40 repeat
PfamPF004000.015313347IPR001680WD40 repeat
PRINTSPR003203.5E-6335349IPR020472G-protein beta WD-40 repeat
SMARTSM0032040352395IPR001680WD40 repeat
SMARTSM003204.1398435IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDLDYNGGNS TSTNKRVFHR LGGGQSANDT SSHNHNQQNQ KVCYHWRAGR CNRFPCPFLH  60
REISAPPPHA AVNGGVGAKR GFVGNDSSSS FSGRRGNNSN SLGRFGNKGD GRGVRGGSVE  120
KVCTYWVQGH CNRGDTCRFL HSWSLGDGFS LLTQLEGHQK VINGIALPSG SDKLYTGSKD  180
ETVRVWDCQS GQCMGVINVG GEVGCMISEG PWIFVGTPNV VKAWNTQTNA DLSLTGPVGQ  240
VYTLVVGNDL LFAGTQDGSI LVWKFNAATY NFEPAASLND HKMAVVSLVV GANRLYSGSM  300
DHSIKVWSLE TLQCVQTLKD HTSVVMSLLC WEQFLLSCSL DQTIKVWAAT ESGNLEVTYT  360
HKEEHGLLTL CGMHDLEGKP ILLCSSNDSS VHFFDLPSFT EKGKIFAKQE IRAIQTGPGG  420
LFFTGDGTGQ VRVWNSVAVP TATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211434355323Tako8
6g6n_A2e-211434355323Tako8
6g6n_B2e-211434355323Tako8
6g6n_C2e-211434355323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0068s0490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321881.20.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLB9ID210.0B9ID21_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1