PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0068s0590.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 121aa MW: 13331.4 Da PI: 8.7632

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0068s0590.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.9e-40	5	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Ga nv k+l++lp + r +a++sl+yeA++r+rdPvyG+vg+i++l+qq SapurV1A.0068s0590.1.p 5 RCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIHGACNVAKMLQQLPAAHlRAEAANSLYYEAQCRTRDPVYGCVGIISSLHQQ 91 6**********************************************98888***************************** PP DUF260 87 leqlkaelallkee 100 +++++++la++k+e SapurV1A.0068s0590.1.p 92 IHSVESQLAKTKAE 105 ********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.358	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-39	5	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MISGRCAACK YLRRRCPSDC IFSPYFPSNN PQRFACVHRI HGACNVAKML QQLPAAHLRA 60 EAANSLYYEA QCRTRDPVYG CVGIISSLHQ QIHSVESQLA KTKAEIAVLD SLAQQPAQIQ 120 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-35	6	106	12	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-35	6	106	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0068s0590.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318256.2	1e-75	LOB domain-containing protein 24
Swissprot	P59468	4e-50	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	B9I4F9	3e-74	B9I4F9_POPTR; Uncharacterized protein
STRING	POPTR_0012s13910.1	5e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-52	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	SapurV1A.0068s0590.1.p