PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0069s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 220aa MW: 24827 Da PI: 6.8341

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0069s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	205.2	2.5e-63	6	170	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlks 84 ++f+ ++q+Cyv C+fC+til+vsvP +sl++vvtv CGhCtsllsvn++k+s +ll+ + s ++el+e+l+ + ++ k SapurV1A.0069s0070.1.p 6 HLFDLPDQICYVPCGFCTTILLVSVPCSSLSTVVTVICGHCTSLLSVNMKKFSflpfNLLT-----SLSNEDELKEQLRPDVNAPKG 87 7899********************************************99944433344.....445578899999999888888 PP YABBY 85 nvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++k++ + s + ++++d+ + + + +++PPekr+r Psayn+fi+eei+r+k++nP i+h+eafs+aaknWah+P++h + SapurV1A.0069s0070.1.p 88 LEMKNSYNVISSDN---DQDHDHIINQGNRvINKPPEKRRRGPSAYNCFIREEIRRLKTENPRIAHKEAFSTAAKNWAHLPHVHCK 170 88776665555544...6777777777766589*************************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-60	11	169	IPR006780	YABBY protein
SuperFamily	SSF47095	5.76E-8	113	165	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.5E-5	118	165	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSSLNHLFDL PDQICYVPCG FCTTILLVSV PCSSLSTVVT VICGHCTSLL SVNMKKFSFL 60 PFNLLTSLSN EDELKEQLRP DVNAPKGLEM KNSYNVISSD NDQDHDHIIN QGNRVINKPP 120 EKRRRGPSAY NCFIREEIRR LKTENPRIAH KEAFSTAAKN WAHLPHVHCK DDGESSGLEE 180 ENGSWSCDAA DQFQVNVESK GLHERKFPRH SMWARTPFE*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0069s0070.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034119.1	1e-129	PREDICTED: axial regulator YABBY 4-like isoform X1
Swissprot	Q9LDT3	9e-69	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2K1ZJQ3	1e-131	A0A2K1ZJQ3_POPTR; Uncharacterized protein
STRING	POPTR_0008s19330.1	1e-125	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-68	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0069s0070.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]