PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0070s0910.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 112aa    MW: 12407.4 Da    PI: 9.197
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0070s0910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26048.72.2e-156104187
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer...............edamsslvyeAearardP 72 
                             +CaaC++ rr+C +d vlap fp + pk+fanv    Ga++++++ +  p   +                da+++   eA  ra  P
  SapurV1A.0070s0910.1.p   6 RCAACRFSRRTCIQDRVLAPDFPPNYPKRFANV---LGARKITEFKRLFPLPAKhmliitsvqlavilsCDAAECTSIEASSRAVHP 89 
                             6*****************************985...7999999998888666655789999999999999***************** PP

                  DUF260  73 vyGavgvilklqqql 87 
                             v+G++g+i++lqq+ 
  SapurV1A.0070s0910.1.p  90 VHGCAGIISQLQQHQ 104
                             ***********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.7145112IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-136105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MSRSTRCAAC RFSRRTCIQD RVLAPDFPPN YPKRFANVLG ARKITEFKRL FPLPAKHMLI  60
ITSVQLAVIL SCDAAECTSI EASSRAVHPV HGCAGIISQL QQHQTIDAQS EL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0070s0910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046521.19e-33PREDICTED: LOB domain-containing protein 24-like
TrEMBLA0A2K1YZY84e-30A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0010s25720.16e-31(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.11e-14LOB domain-containing protein 4