PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0071s0650.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 258aa MW: 30003.8 Da PI: 5.4914

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0071s0650.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.9e-24	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCs+eg+r+++ ++++ + ++tr gC+a+l++ ++ +w vtk+ eH SapurV1A.0071s0650.1.p 78 EFYIAYGRRTGFTVRIHHNRRSRINNMVIGQDFVCSREGFRDKKYVYRKDR-VlpPPPVTREGCQAMLRLAFKDGITWAVTKFIAEH 163 6****************************************99883333.234899************************* PP FAR1 86 nHela 90 nH+l+ SapurV1A.0071s0650.1.p 164 NHALM 168 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-21	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDSTSKQAFD LDETESCFAV ENYDEHEFVD DELSGNIELC LDEVDKIIEQ SSETLSSVND 60 AIEPYIGMEF KSREDAREFY IAYGRRTGFT VRIHHNRRSR INNMVIGQDF VCSREGFRDK 120 KYVYRKDRVL PPPPVTREGC QAMLRLAFKD GITWAVTKFI AEHNHALMSP SKVPWRGSAK 180 SMVSEDEKDR RIRELTIELN NEKQRCKRRC AAYEEQLRKV LSYVEEHTIH LSNKVQGIVN 240 KVKELENEME DSDCKYV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0071s0650.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002303020.1	1e-178	protein FAR1-RELATED SEQUENCE 8
TrEMBL	B9GNH4	1e-177	B9GNH4_POPTR; Uncharacterized protein
STRING	POPTR_0002s24030.1	1e-178	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-36	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0071s0650.1.p