PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0071s0660.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 196aa MW: 22278.3 Da PI: 8.6322

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0071s0660.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.7	2.7e-25	28	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+eYA+++GF vr+ + ++s +g++ r++ C+k+g++ + +++ +++r++ r gCka++ vk++k+gkw+vt++e++H SapurV1A.0071s0660.1.p 28 NFYSEYARRLGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNIRTAagPGPDKKPRPSAREGCKATILVKMDKSGKWVVTRFEKDH 114 6*************************************998877766788999**************************** PP FAR1 86 nHela 90 nH+l+ SapurV1A.0071s0660.1.p 115 NHPLV 119 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-23	28	119	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDVEEEEKTG IVEPCVGMEF ESEDAARNFY SEYARRLGFV VRVMQRRRSG IDGRTLARRL 60 GCNKQGFSPN IRTAAGPGPD KKPRPSAREG CKATILVKMD KSGKWVVTRF EKDHNHPLVV 120 TASGFSSSGD KDKKIEELMK ELEHQEHLCA TYREKLVSFM NNVEEQTEEL ASKIQLIVDN 180 VRKVESEVQN FSRRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0071s0660.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024733.1	1e-133	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011024734.1	1e-133	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9GNH5	1e-131	B9GNH5_POPTR; FAR1 family protein
STRING	POPTR_0002s24040.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-68	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0071s0660.1.p