PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0075s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 374aa    MW: 41539.2 Da    PI: 6.6541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0075s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.5e-21173223256
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  SapurV1A.0075s0120.1.p 173 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 223
                             59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-34172232No hitNo description
SMARTSM003804.4E-38173236IPR001471AP2/ERF domain
PROSITE profilePS5103223.235173230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32173231IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23173231IPR016177DNA-binding domain
PRINTSPR003673.7E-11174185IPR001471AP2/ERF domain
PfamPF008471.9E-14174223IPR001471AP2/ERF domain
PRINTSPR003673.7E-11196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAAAIDIYNT AVPVFSDPYR GELMKALEPF MKSASPSPSS TSYFSPSPST SSHSFSSYPS  60
SYHSNSFPVT SHPNLDLNFY TPTSTQMFSK GFSGYNQMDF EQKGPIGLNH LTPSQILQIQ  120
AKIHLQQQQQ EQQMANHSPS SQLVHNQRTG NFLAPKPVPM KQQSASPQKP TKLYRGVRQR  180
HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL RGEFARLNFP HLRHQGAHVS  240
GEFGDYKPLH SSVDAKLQAI CQSLGLQKQG ETGEPCSVAD SKKTASAPLQ AKIEDDWSLK  300
GELKREFENS GVEEFKAEIP SPSPASSDES LAGSSSPESE ISFFFSDSLQ RDDEFENFGL  360
EKYPSVEIDW SSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21172230160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0075s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472170.0EF147217.1 Populus trichocarpa clone WS01229_H04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310574.30.0ethylene-responsive transcription factor RAP2-4
RefseqXP_011022769.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
TrEMBLA9PFU00.0A9PFU0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-54related to AP2 4