PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0077s0430.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 438aa MW: 49573.7 Da PI: 6.6528

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0077s0430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.2	3.5e-45	51	190	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF P+d+elv++yL kkv+g +l++ + i +vdiy+++P+ L + +++ekew+fF++r++ky++g+r+nra+ gyWkat SapurV1A.0077s0430.1.p 51 LPPGYRFCPHDHELVMYYLDKKVKGLPLPM-NRIVNVDIYQFDPEFLSaRYNNHGEKEWFFFTPRSRKYRNGTRPNRAAGGGYWKAT 136 79**************************.77**********9344455788************************** PP NAM 87 gkdkevlsk............kgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+v+ + ++ +vg +k Lv+y+g+apkgekt+W+mhe+rl SapurV1A.0077s0430.1.p 137 GADKAVKYEknvigadnkikiQKITVGQRKALVYYNGKAPKGEKTNWIMHEFRL 190 **9986666665555444444*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-52	46	217	IPR003441	NAC domain
PROSITE profile	PS51005	50.528	51	217	IPR003441	NAC domain
Pfam	PF02365	2.5E-23	52	190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MASNSPPVPP VPQPLSTINP PFQARSAFTS QPPPPQVFAN YQDTDRYFNS LPPGYRFCPH 60 DHELVMYYLD KKVKGLPLPM NRIVNVDIYQ FDPEFLSARY NNHGEKEWFF FTPRSRKYRN 120 GTRPNRAAGG GYWKATGADK AVKYEKNVIG ADNKIKIQKI TVGQRKALVY YNGKAPKGEK 180 TNWIMHEFRL DDPPLHVRNN RDDMRLDDCV LCRIYKKRGK RTNADTTVRV QQSNEEISLL 240 MTIEGNDEDF INEHGYDPNR LSAIEASFAG EIHGMITPPL ENSFPIHDEL SQQQTDPSGF 300 PDASNFYTLQ ASPIPGLEEA FGTPAPMDFF NSEDWFYTQM EHRDEFLMNP ANSSQYYNIP 360 DQFVNLYPTM STNLQTNPSP LVNIFPMNTA PAYGSLPPMS TAPLTAPLRP ANPASTHPTS 420 EMMNVAPNHP GQPPQHR*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MASNSPPVPP VPQPLSTINP PFQARSAFTS QPPPPQVFAN YQDTDRYFNS LPPGYRFCPH  60
DHELVMYYLD KKVKGLPLPM NRIVNVDIYQ FDPEFLSARY NNHGEKEWFF FTPRSRKYRN  120
GTRPNRAAGG GYWKATGADK AVKYEKNVIG ADNKIKIQKI TVGQRKALVY YNGKAPKGEK  180
TNWIMHEFRL DDPPLHVRNN RDDMRLDDCV LCRIYKKRGK RTNADTTVRV QQSNEEISLL  240
MTIEGNDEDF INEHGYDPNR LSAIEASFAG EIHGMITPPL ENSFPIHDEL SQQQTDPSGF  300
PDASNFYTLQ ASPIPGLEEA FGTPAPMDFF NSEDWFYTQM EHRDEFLMNP ANSSQYYNIP  360
DQFVNLYPTM STNLQTNPSP LVNIFPMNTA PAYGSLPPMS TAPLTAPLRP ANPASTHPTS  420
EMMNVAPNHP GQPPQHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	50	218	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	50	218	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	50	218	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	50	218	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	50	218	19	169	NAC domain-containing protein 19
3swm_B	2e-50	50	218	19	169	NAC domain-containing protein 19
3swm_C	2e-50	50	218	19	169	NAC domain-containing protein 19
3swm_D	2e-50	50	218	19	169	NAC domain-containing protein 19
3swp_A	2e-50	50	218	19	169	NAC domain-containing protein 19
3swp_B	2e-50	50	218	19	169	NAC domain-containing protein 19
3swp_C	2e-50	50	218	19	169	NAC domain-containing protein 19
3swp_D	2e-50	50	218	19	169	NAC domain-containing protein 19
4dul_A	2e-50	50	218	16	166	NAC domain-containing protein 19
4dul_B	2e-50	50	218	16	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0077s0430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452071.1	0.0	protein ATAF2
TrEMBL	A0A3N7EC69	0.0	A0A3N7EC69_POPTR; Uncharacterized protein
STRING	POPTR_0009s05690.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	4e-56	NAC family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0077s0430.1.p