PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0077s0520.7.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 453aa    MW: 50489.8 Da    PI: 7.1341
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0077s0520.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.4e-09232255226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             ++++C +far G+Ck G++CkF Hg
  SapurV1A.0077s0520.7.p 232 GYRPCLYFAR-GFCKNGESCKFVHG 255
                             689*******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.911230257IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6232255IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016232256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5233255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5234256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDTYKITSIL LTKLKSLDPE NASRIMGFIL IQDPTEKDLL RLAFGPETLL QNVVFKAKIH  60
LRLSTNTLST PSSPSPLNPI ARPCNKTSPL PQSSPRITDN GSFLDFAKNQ SPNPWPVHGL  120
PNNSDSKSSI STKSSPFLSY DNIRSGSVLV PPFSRNGGGV CSNNGADFLG EYQSDDHLSF  180
LEDHSSKNEE FMEQSDQLGG YTVANGDAHL HRRRFSESDV CFGAEDGGFG LGYRPCLYFA  240
RGFCKNGESC KFVHGGENMA EFNGGGALVS SPREMEELYL QQQEEMMKMK AVQRRQQQQR  300
LAYNKHMNFL LLKQNEAERF GTAMTSDEFY KFGRTRGVRN DFLAMGMAEM ANSASRQIYL  360
TFPAESSFKD EDVSNFFSSR CQDSIPAEAN VWICYICLPR DCEGNISKGK PSLYLRVTRA  420
CQAIQGERKS SKQDATVTGE GEFFTCFKPY RV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0077s0520.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447837.10.0zinc finger CCCH domain-containing protein 55 isoform X5
TrEMBLA0A2K2C3L10.0A0A2K2C3L1_POPTR; Uncharacterized protein
TrEMBLA0A3N7FDD80.0A0A3N7FDD8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s26240.10.0(Populus trichocarpa)