PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0078s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 210aa MW: 24691 Da PI: 8.5504

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0078s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.4e-07	126	146	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r G C +G++C F+Hg SapurV1A.0078s0030.1.p 126 ACPEFRR-GGCGRGENCEFSHG 146 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.9E-4	121	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.638	122	148	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	126	149	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.3E-5	126	146	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.136	156	180	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	17	156	179	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSTICAEQHK LYLLSPKKPF KDLDQILSRK LFTKKTHQES TLEMSPYDET NLRRFLPCND 60 HYSIEKQVLD EDELDPYSSD HFRMYEFKVR RCTRSRSHDW TDCPFAHPGE KARRRDPRRF 120 HYSGTACPEF RRGGCGRGEN CEFSHGVFEF WLHPSRYRTE ACKDGMNCER KICFFAHSPR 180 QLRILPEVSS HNKSLASPCL SPCSVFEKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0078s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029046.1	1e-113	PREDICTED: zinc finger CCCH domain-containing protein 2
Swissprot	Q9ZWA1	3e-70	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	U5FMC6	1e-112	U5FMC6_POPTR; Uncharacterized protein
STRING	POPTR_0017s04510.1	1e-113	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6261	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	4e-58	C3H family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0078s0030.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]