PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0078s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 315aa    MW: 35081.4 Da    PI: 6.5085
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0078s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-172471148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT +Ed ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
  SapurV1A.0078s0260.1.p 24 RGPWTLQEDTLLTRYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYL 71
                            89********************************************97 PP
2Myb_DNA-binding52.21.4e-1677120146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  SapurV1A.0078s0260.1.p  77 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5891971IPR017930Myb domain
SuperFamilySSF466898.03E-3121118IPR009057Homeodomain-like
SMARTSM007171.2E-142373IPR001005SANT/Myb domain
PfamPF002493.2E-152471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-232578IPR009057Homeodomain-like
CDDcd001671.70E-112671No hitNo description
PROSITE patternPS0017503948IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.06372126IPR017930Myb domain
SMARTSM007172.7E-1576124IPR001005SANT/Myb domain
PfamPF002491.4E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2379125IPR009057Homeodomain-like
CDDcd001674.87E-1281120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRASMLGVTK RIYSSSEEES GLRRGPWTLQ EDTLLTRYIA RHGEGRWNML AKCAGLKRTG  60
KSCRLRWLNY LKPDIKRGNL TPQEQLLILE LHSKWGNRWS KIAQHLPGRT DNEIKNYWRT  120
KVQKEARQLN IEANSEKFLD AVRSFWIPRL LQKMEQASCS SSLATLDSQS QADHGVKSPP  180
SNSTVPSSLS TLLCPPESQS AHYSNLGSEK SGSVTSPTVL STNSNTISPQ PETLEKNPTC  240
SLLPGDAICS NLILSGSCYD LDGFDQASAG MGAYDNSPVE CQMGEGNWVF DSMEDTLWDM  300
DDTWHFRDLS ETGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24221265108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0078s0260.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315935.10.0transcription factor MYB62
SwissprotQ9C9G72e-91MYB62_ARATH; Transcription factor MYB62
TrEMBLB9HWG30.0B9HWG3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-93myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]